ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3d4oB1 - ECOD Domain | ECOD

ECOD/Domains/e3d4oB1

e3d4oB1

UID: 002037526

PDB

Range: B:126-269
PDB: 3D4O chain B(all domains)
UniProt: Q9KA87 (all domains)
Gene: spoVFA

Molecule: Dipicolinate synthase subunit A

3D Structure

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Related Domains

Browse other domains in AlaDh_PNT_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyAlaDh_PNT_C(2003.1.1.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01262AlaDh_PNT_C

Alanine dehydrogenase/PNT, C-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3D4O RCSB PDB: 3D4O PDBe: 3D4O UniProt: Q9KA87

Downloads

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