ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3d4oD2 - ECOD Domain | ECOD

ECOD/Domains/e3d4oD2

e3d4oD2

UID: 002037531

PDB

Range: D:0-126,D:270-290
PDB: 3D4O chain D(all domains)
UniProt: Q9KA87 (all domains)
Gene: spoVFA

Molecule: Dipicolinate synthase subunit A

3D Structure

Loading viewer...

Related Domains

Browse other domains in DpaA_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFormate/glycerate dehydrogenase catalytic domain-like(2003.1.11)

FFamilyDpaA_N(2003.1.11.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Dipicolinate synthase subunit A N-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3D4O RCSB PDB: 3D4O PDBe: 3D4O UniProt: Q9KA87

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure