ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ubkA1 - ECOD Domain | ECOD

ECOD/Domains/e5ubkA1

e5ubkA1

UID: 002038530

PDB

Range: A:1-717
PDB: 5UBK chain A(all domains)
UniProt: Q9I194 (all domains)
Gene: pvdQ

Molecule: Acyl-homoserine lactone acylase PvdQ

3D Structure

Loading viewer...

Related Domains

Browse other domains in Penicil_amidase →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupPenicillin acylase, catalytic domain(210.1.2)

FFamilyPenicil_amidase(210.1.2.1)

Ligands

in contact, ≤ 4 Å

N-[(1R)-1-{(6S)-6-[(2-amino-2-oxoethyl)carbamoyl]-1,4,5,6-tetrahydropyrimidin-2-yl}-2-(4-hydroxyphenyl)ethyl]-N~2~-tetradecanoyl-L-glutamine83M

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01804Penicil_amidase

Penicillin amidase

ClanCL0052NTN

External Links

ECOD PDB View: 5UBK RCSB PDB: 5UBK PDBe: 5UBK UniProt: Q9I194

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure