ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2qciB1 - ECOD Domain | ECOD

ECOD/Domains/e2qciB1

e2qciB1

UID: 000020392

PDB

Range: B:101-199
PDB: 2QCI chain B(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE065
Chloride ionCL

+ 1 additive (Acetate)

AcetateACT

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2QCI RCSB PDB: 2QCI PDBe: 2QCI UniProt: P03367

Downloads

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DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.