ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2aoeB1 - ECOD Domain | ECOD

ECOD/Domains/e2aoeB1

e2aoeB1

UID: 000020415

PDB

Range: B:101-199
PDB: 2AOE chain B(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: POL POLYPROTEIN

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide0Q4
Chloride ionCL

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2AOE RCSB PDB: 2AOE PDBe: 2AOE UniProt: P04587

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.