ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j6sB4 - ECOD Domain | ECOD

ECOD/Domains/e5j6sB4

e5j6sB4

UID: 002042038

PDB

Range: B:271-502,B:533-546
PDB: 5J6S chain B(all domains)
UniProt: Q6P179 (all domains)
Gene: ERAP2

Molecule: Endoplasmic reticulum aminopeptidase 2

3D Structure

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Related Domains

Browse other domains in Peptidase_M1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M1(2498.1.1.9)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
(2S)-N~1~-benzyl-2-[(4-fluorophenyl)methyl]-N~3~-hydroxypropanediamide6GA
Zinc ionZN

Pfam Families

PF01433Peptidase_M1

Peptidase family M1 domain

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 5J6S RCSB PDB: 5J6S PDBe: 5J6S UniProt: Q6P179

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.