ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jp9B1 - ECOD Domain | ECOD

ECOD/Domains/e5jp9B1

e5jp9B1

UID: 002042052

PDB

Range: B:5-329
PDB: 5JP9 chain B(all domains)
UniProt: B4Y380 (all domains)
Gene: milA

Molecule: CMP 5-hydroxymethylase

3D Structure

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Related Domains

Browse other domains in Thymidylat_synt →

Classification

AArchitecturea+b two layers(a.11)

XX-groupThymidylate synthase/dCMP hydroxymethylase(266)

HH-groupThymidylate synthase/dCMP hydroxymethylase(266.1)

TT-groupThymidylate synthase/dCMP hydroxymethylase(266.1.1)

FFamilyThymidylat_synt(266.1.1.1)

Ligands

in contact, ≤ 4 Å

2'-Deoxycytidine-5'-MonophosphateDCM
drugDrugBank DB03798

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00303Thymidylat_synt

Thymidylate synthase

External Links

ECOD PDB View: 5JP9 RCSB PDB: 5JP9 PDBe: 5JP9 UniProt: B4Y380

Downloads

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