ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5llyD2 - ECOD Domain | ECOD

ECOD/Domains/e5llyD2

e5llyD2

UID: 002042116

PDB

Range: D:128-315
PDB: 5LLY chain D(all domains)
UniProt: F7RW09 (all domains)

Molecule: Diguanylate cyclase (GGDEF) domain-containing protein

3D Structure

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Related Domains

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Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupsensor domains(223.1)

TT-groupsensor domains(223.1.1)

FFamilyGAF(223.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acidLBV

+ 1 additive (Glycerin)

Pfam Families

GAF domain

ClanCL0161GAF

External Links

ECOD PDB View: 5LLY RCSB PDB: 5LLY PDBe: 5LLY UniProt: F7RW09

Downloads

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GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.