ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3glfJ3 - ECOD Domain | ECOD

ECOD/Domains/e3glfJ3

e3glfJ3

UID: 002043075

PDB

Range: J:1-165
PDB: 3GLF chain J(all domains)
UniProt: P28631 (all domains)
Gene: holB

Molecule: DNA polymerase III subunit delta'

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_pol3_delta2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyDNA_pol3_delta2(2004.1.1.187)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Beryllium trifluoride ionBEF
Magnesium ionMG

Pfam Families

PF13177DNA_pol3_delta2

DNA polymerase III, delta subunit

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 3GLF RCSB PDB: 3GLF PDBe: 3GLF UniProt: P28631

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.