ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1t7kA1 - ECOD Domain | ECOD

ECOD/Domains/e1t7kA1

e1t7kA1

UID: 000020443

PDB

Range: A:1-99
PDB: 1T7K chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Pol polyprotein [Contains: Protease (Retropepsin)]

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

3-{[(5R,6R)-5-Benzyl-6-hydroxy-2,4-bis(4-hydroxybenzyl)-3-oxo-1,2,4-triazepan-1-yl]sulfonyl}benzonitrilBH0
drugDrugBank DB03141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1T7K RCSB PDB: 1T7K PDBe: 1T7K UniProt: P03366

Downloads

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