ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b3sO1 - ECOD Domain | ECOD

ECOD/Domains/e5b3sO1

e5b3sO1

UID: 002044894

PDB

Range: O:91-227
PDB: 5B3S chain O(all domains)
UniProt: P68530 (all domains)
Gene: MT-CO2

Molecule: Cytochrome c oxidase subunit 2

3D Structure

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Related Domains

Browse other domains in COX2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupCupredoxin-like(3156)

HH-groupCupredoxin-related(3156.1)

TT-groupCupredoxin-related(3156.1.1)

FFamilyCOX2(3156.1.1.1)

Ligands

in contact, ≤ 4 Å

Dinuclear copper ionCUA
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

Cytochrome C oxidase subunit II, periplasmic domain

ClanCL0026CU_oxidase

External Links

ECOD PDB View: 5B3S RCSB PDB: 5B3S PDBe: 5B3S UniProt: P68530

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.