ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b3sU1 - ECOD Domain | ECOD

ECOD/Domains/e5b3sU1

e5b3sU1

UID: 002044907

PDB

Range: U:7-85
PDB: 5B3S chain U(all domains)
UniProt: P00429 (all domains)
Gene: COX6B1

Molecule: Cytochrome c oxidase subunit 6B1

3D Structure

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Related Domains

Browse other domains in COX6B →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCytochrome c oxidase subunit h(540)

HH-groupCytochrome c oxidase subunit h(540.1)

TT-groupCytochrome c oxidase subunit h(540.1.1)

FFamilyCOX6B(540.1.1.1)

Ligands

in contact, ≤ 4 Å

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

+ 2 additives (Phosphate ion, 1,2-ETHANEDIOL)

Phosphate ionPO4
DrugBank DB14523within 5 Å only

Pfam Families

Cytochrome oxidase c subunit VIb

ClanCL0351CHCH

External Links

ECOD PDB View: 5B3S RCSB PDB: 5B3S PDBe: 5B3S UniProt: P00429

Downloads

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1,2-ETHANEDIOL

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.