ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5b3sV1 - ECOD Domain | ECOD

ECOD/Domains/e5b3sV1

e5b3sV1

UID: 002044909

PDB

Range: V:1-73
PDB: 5B3S chain V(all domains)
UniProt: P04038 (all domains)
Gene: COX6C

Molecule: Cytochrome c oxidase subunit 6C

3D Structure

Loading viewer...

Related Domains

Browse other domains in COX6C →

Classification

AArchitectureextended segments(a.20)

XX-groupMitochondrial cytochrome c oxidase subunit VIc(5005)

HH-groupMitochondrial cytochrome c oxidase subunit VIc(5005.1)

TT-groupMitochondrial cytochrome c oxidase subunit VIc(5005.1.1)

FFamilyCOX6C(5005.1.1.1)

Ligands

in contact, ≤ 4 Å

(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEPSC
TristearoylglycerolTGL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

Cytochrome c oxidase subunit VIc

External Links

ECOD PDB View: 5B3S RCSB PDB: 5B3S PDBe: 5B3S UniProt: P04038

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.