ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5fyvA2 - ECOD Domain | ECOD

ECOD/Domains/e5fyvA2

e5fyvA2

UID: 002044947

PDB

Range: A:661-753
PDB: 5FYV chain A(all domains)
UniProt: Q9UGL1 (all domains)
Gene: KDM5B

Molecule: LYSINE-SPECIFIC DEMETHYLASE 5B

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-C5HC2 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupGlucocorticoid receptor-like(377)

HH-groupLIM domain-like(377.1)

TT-groupLIM domain-like(377.1.1)

FFamilyzf-C5HC2(377.1.1.12)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Phosphate ion, 1,2-ETHANEDIOL)

Phosphate ionPO4
DrugBank DB14523
1,2-ETHANEDIOL

Pfam Families

PF02928zf-C5HC2

C5HC2 zinc finger

External Links

ECOD PDB View: 5FYV RCSB PDB: 5FYV PDBe: 5FYV UniProt: Q9UGL1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.