ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5h2fY1 - ECOD Domain | ECOD

ECOD/Domains/e5h2fY1

e5h2fY1

UID: 002045019

PDB

Range: Y:18-46
PDB: 5H2F chain Y(all domains)
UniProt: Q8DJI1 (all domains)
Gene: psb30

Molecule: Photosystem II reaction center protein Ycf12

3D Structure

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Related Domains

Browse other domains in PSII_Ycf12 →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein ycf12(3379)

HH-groupPhotosystem II reaction center protein ycf12(3379.1)

TT-groupPhotosystem II reaction center protein ycf12(3379.1.1)

FFamilyPSII_Ycf12(3379.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll aCLA
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG
Magnesium ionMG

Pfam Families

PF05969PSII_Ycf12

Photosystem II complex subunit Ycf12

External Links

ECOD PDB View: 5H2F RCSB PDB: 5H2F PDBe: 5H2F UniProt: Q8DJI1

Downloads

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metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.