ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jjqD1 - ECOD Domain | ECOD

ECOD/Domains/e5jjqD1

e5jjqD1

UID: 002045089

PDB

Range: D:153-339
PDB: 5JJQ chain D(all domains)
UniProt: A0A077KT11 (all domains)
Gene: idnL1

Molecule: AMP-dependent synthetase and ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCoA-dependent acyltransferases(323)

HH-groupCoA-dependent acyltransferases(323.1)

TT-groupCoA-dependent acyltransferases(323.1.1)

FFamilyAMP-binding(323.1.1.3)

Ligands

in contact, ≤ 4 Å

5'-O-[(R)-{[(3S)-3-aminobutanoyl]oxy}(hydroxy)phosphoryl]adenosine6L1
Chloride ionCL
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 5JJQ RCSB PDB: 5JJQ PDBe: 5JJQ UniProt: A0A077KT11

Downloads

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