ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jt1A2 - ECOD Domain | ECOD

ECOD/Domains/e5jt1A2

e5jt1A2

UID: 002045142

PDB

Range: A:1-204
PDB: 5JT1 chain A(all domains)
UniProt: Q72AS4 (all domains)
Gene: hysB

Molecule: Periplasmic [NiFeSe] hydrogenase, small subunit

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

oxygen-damaged SF46ML
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 5JT1 RCSB PDB: 5JT1 PDBe: 5JT1 UniProt: Q72AS4

Downloads

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