ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5px8B1 - ECOD Domain | ECOD

ECOD/Domains/e5px8B1

e5px8B1

UID: 002045792

PDB

Range: B:700-752
PDB: 5PX8 chain B(all domains)
UniProt: P23497 (all domains)
Gene: SP100

Molecule: Nuclear autoantigen Sp-100

3D Structure

Loading viewer...

Related Domains

Browse other domains in PHD →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD(376.1.3.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PHD-finger

ClanCL0229RING

External Links

ECOD PDB View: 5PX8 RCSB PDB: 5PX8 PDBe: 5PX8 UniProt: P23497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure