ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5pymB1 - ECOD Domain | ECOD

ECOD/Domains/e5pymB1

e5pymB1

UID: 002045992

PDB

Range: B:700-752
PDB: 5PYM chain B(all domains)
UniProt: P23497 (all domains)
Gene: SP100

Molecule: Nuclear autoantigen Sp-100

3D Structure

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Related Domains

Browse other domains in PHD →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD(376.1.3.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PHD-finger

ClanCL0229RING

External Links

ECOD PDB View: 5PYM RCSB PDB: 5PYM PDBe: 5PYM UniProt: P23497

Downloads

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