ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5sz8B1 - ECOD Domain | ECOD

ECOD/Domains/e5sz8B1

e5sz8B1

UID: 002046127

PDB

Range: B:30-234
PDB: 5SZ8 chain B(all domains)
UniProt: P16466 (all domains)
Gene: hpmA

Molecule: Hemolysin

3D Structure

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Related Domains

Browse other domains in TPS →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyTPS(207.2.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

TPS secretion domain

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 5SZ8 RCSB PDB: 5SZ8 PDBe: 5SZ8 UniProt: P16466

Downloads

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