ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b5nQ1 - ECOD Domain | ECOD

ECOD/Domains/e5b5nQ1

e5b5nQ1

UID: 002046544

PDB

Range: Q:2-61
PDB: 5B5N chain Q(all domains)
UniProt: D2Z0P2 (all domains)
Gene: pufA

Molecule: LH1 alpha polypeptide

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Barium ionBA
metal
Spirilloxanthin

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 5B5N RCSB PDB: 5B5N PDBe: 5B5N UniProt: D2Z0P2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.