ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jwaA1 - ECOD Domain | ECOD

ECOD/Domains/e5jwaA1

e5jwaA1

UID: 002048175

RepresentativePDB

Range: A:39-152,A:311-359,A:431-467
PDB: 5JWA chain A(all domains)
UniProt: Q8I302 (all domains)
Gene: PF3D7_0915000

Molecule: NADH dehydrogenase, putative

3D Structure

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Related Domains

Browse other domains in Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyPyr_redox_2(2003.1.2.24)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Magnesium ionMG
metal

+ 1 additive (Acetate)

Pfam Families

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5JWA RCSB PDB: 5JWA PDBe: 5JWA UniProt: Q8I302

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.