ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ly8A1 - ECOD Domain | ECOD

ECOD/Domains/e5ly8A1

e5ly8A1

UID: 002048183

RepresentativePDB

Range: A:10-239
PDB: 5LY8 chain A(all domains)
UniProt: U5U3S0 (all domains)
Gene: J1_16

Molecule: Tail component

3D Structure

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Related Domains

Browse other domains in Dit-like_CBM2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyDit-like_CBM2(10.1.1.50)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21869Dit-like_CBM2

Distal tail component, second carbohydrate binding domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 5LY8 RCSB PDB: 5LY8 PDBe: 5LY8 UniProt: U5U3S0

Downloads

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