ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5l8qC1 - ECOD Domain | ECOD

ECOD/Domains/e5l8qC1

e5l8qC1

UID: 002048485

PDB

Range: C:2-255
PDB: 5L8Q chain C(all domains)
UniProt: Q8B3M2 (all domains)

Molecule: VP3

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU
drugDrugBank DB03685within 5 Å only
URIDINE-5'-MONOPHOSPHATEU5P

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5L8Q RCSB PDB: 5L8Q PDBe: 5L8Q UniProt: Q8B3M2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure