ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rk0B1 - ECOD Domain | ECOD

ECOD/Domains/e4rk0B1

e4rk0B1

UID: 002050955

PDB

Range: B:70-170,B:294-336
PDB: 4RK0 chain B(all domains)
UniProt: Q82ZT5 (all domains)
Gene: EF_2962

Molecule: LacI family sugar-binding transcriptional regulator

3D Structure

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Related Domains

Browse other domains in Peripla_BP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_1(2007.1.2.2)

Ligands

in contact, ≤ 4 Å

alpha-D-ribofuranoseRIB

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00532Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4RK0 RCSB PDB: 4RK0 PDBe: 4RK0 UniProt: Q82ZT5

Downloads

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