ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rk1F2 - ECOD Domain | ECOD

ECOD/Domains/e4rk1F2

e4rk1F2

UID: 002050971

PDB

Range: F:67-166,F:297-339
PDB: 4RK1 chain F(all domains)
UniProt: I3TZ89 (all domains)
Gene: rbsR

Molecule: Ribose transcriptional regulator

3D Structure

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Related Domains

Browse other domains in Peripla_BP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_1(2007.1.2.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
alpha-D-ribofuranoseRIB

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00532Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4RK1 RCSB PDB: 4RK1 PDBe: 4RK1 UniProt: I3TZ89

Downloads

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