ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kohD3 - ECOD Domain | ECOD

ECOD/Domains/e5kohD3

e5kohD3

UID: 002051610

PDB

Range: D:209-344
PDB: 5KOH chain D(all domains)
UniProt: A9H5W8 (all domains)
Gene: nifK

Molecule: Nitrogenase FeMo beta subunit protein NifK

3D Structure

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Related Domains

Browse other domains in Oxidored_nitro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyOxidored_nitro(2007.1.14.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00148Oxidored_nitro

Nitrogenase component 1 type Oxidoreductase

ClanCL0043Chelatase

External Links

ECOD PDB View: 5KOH RCSB PDB: 5KOH PDBe: 5KOH UniProt: A9H5W8

Downloads

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