ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jjqB2 - ECOD Domain | ECOD

ECOD/Domains/e5jjqB2

e5jjqB2

UID: 002051778

PDB

Range: B:424-508
PDB: 5JJQ chain B(all domains)
UniProt: A0A077KT11 (all domains)
Gene: idnL1

Molecule: AMP-dependent synthetase and ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5)

TT-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5.1)

FFamilyAMP-binding_C(327.5.1.2)

Ligands

in contact, ≤ 4 Å

5'-O-[(R)-{[(3S)-3-aminobutanoyl]oxy}(hydroxy)phosphoryl]adenosine6L1

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13193AMP-binding_C

AMP-binding enzyme C-terminal domain

ClanCL0531AMP-binding_C

External Links

ECOD PDB View: 5JJQ RCSB PDB: 5JJQ PDBe: 5JJQ UniProt: A0A077KT11

Downloads

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