ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1sdvB1 - ECOD Domain | ECOD

ECOD/Domains/e1sdvB1

e1sdvB1

UID: 000020530

PDB

Range: B:101-199
PDB: 1SDV chain B(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: protease RETROPEPSIN

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

IndinavirMK1
drugDrugBank DB00224
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1SDV RCSB PDB: 1SDV PDBe: 1SDV UniProt: P03367

Downloads

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