ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mx4F1 - ECOD Domain | ECOD

ECOD/Domains/e5mx4F1

e5mx4F1

UID: 002055692

PDB

Range: F:1-233
PDB: 5MX4 chain F(all domains)
UniProt: K2JXG0 (all domains)
Gene: deoD

Molecule: Purine nucleoside phosphorylase DeoD-type

3D Structure

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Related Domains

Browse other domains in PNP_UDP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPeptidyl-tRNA hydrolase-like(2011.2)

TT-groupPeptidyl-tRNA hydrolase-like(2011.2.1)

FFamilyPNP_UDP_1(2011.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01048PNP_UDP_1

Phosphorylase superfamily

ClanCL0408PUP

External Links

ECOD PDB View: 5MX4 RCSB PDB: 5MX4 PDBe: 5MX4 UniProt: K2JXG0

Downloads

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