ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n0hA1 - ECOD Domain | ECOD

ECOD/Domains/e5n0hA1

e5n0hA1

UID: 002055700

PDB

Range: A:41-273
PDB: 5N0H chain A(all domains)
UniProt: C7C422 (all domains)
Gene: blaNDM-1

Molecule: Metallo-beta-lactamase type 2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal
(2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid8YL
within 5 Å only

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5N0H RCSB PDB: 5N0H PDBe: 5N0H UniProt: C7C422

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.