ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c1zB1 - ECOD Domain | ECOD

ECOD/Domains/e5c1zB1

e5c1zB1

UID: 002059834

PDB

Range: B:79-227
PDB: 5C1Z chain B(all domains)
UniProt: O60260 (all domains)
Gene: PRKN

Molecule: E3 ubiquitin-protein ligase parkin

3D Structure

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Related Domains

Browse other domains in zf-RING_12 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-RING_12(376.1.1.33)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

PF17976zf-RING_12

RING/Ubox like zinc-binding domain

ClanCL0229RING

External Links

ECOD PDB View: 5C1Z RCSB PDB: 5C1Z PDBe: 5C1Z UniProt: O60260

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.