ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c1zB4 - ECOD Domain | ECOD

ECOD/Domains/e5c1zB4

e5c1zB4

UID: 002059836

PDB

Range: B:411-465
PDB: 5C1Z chain B(all domains)
UniProt: O60260 (all domains)
Gene: PRKN

Molecule: E3 ubiquitin-protein ligase parkin

3D Structure

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Related Domains

Browse other domains in IBR_2 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupAriadne-1 protein homolog(376.1.4)

FFamilyIBR_2(376.1.4.3)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
Glycerol

Pfam Families

IBR domain

ClanCL0229RING

External Links

ECOD PDB View: 5C1Z RCSB PDB: 5C1Z PDBe: 5C1Z UniProt: O60260

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.