ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ja8G1 - ECOD Domain | ECOD

ECOD/Domains/e5ja8G1

e5ja8G1

UID: 002060432

PDB

Range: G:0-110
PDB: 5JA8 chain G(all domains)
UniProt: Q9KMA6 (all domains)
Gene: higB-2

Molecule: Toxin HigB-2

3D Structure

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Related Domains

Browse other domains in RelE →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRelE-like(4312)

HH-groupRelE-like(4312.1)

TT-groupRelE-like(4312.1.1)

FFamilyRelE(4312.1.1.5)

Ligands

in contact, ≤ 4 Å

1,3-PropanediolPDO
drugDrugBank DB02774

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

RelE toxin of RelE / RelB toxin-antitoxin system

ClanCL0136Plasmid_toxin

External Links

ECOD PDB View: 5JA8 RCSB PDB: 5JA8 PDBe: 5JA8 UniProt: Q9KMA6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.