ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gz6A1 - ECOD Domain | ECOD

ECOD/Domains/e5gz6A1

e5gz6A1

UID: 002060664

PDB

Range: A:2-122,A:275-326
PDB: 5GZ6 chain A(all domains)
UniProt: G1UII1 (all domains)
Gene: ddh

Molecule: Meso-diaminopimelate D-dehydrogenase

3D Structure

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Related Domains

Browse other domains in DapB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyDapB_N(2003.1.1.12)

Ligands

in contact, ≤ 4 Å

NADPHNDP
drugDrugBank DB02338

+ 2 additives (Sulfate ion, Acetate)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Dihydrodipicolinate reductase, N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5GZ6 RCSB PDB: 5GZ6 PDBe: 5GZ6 UniProt: G1UII1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate

DrugBank DB14511within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.