ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gz6A2 - ECOD Domain | ECOD

ECOD/Domains/e5gz6A2

e5gz6A2

UID: 002060665

PDB

Range: A:123-274
PDB: 5GZ6 chain A(all domains)
UniProt: G1UII1 (all domains)
Gene: ddh

Molecule: Meso-diaminopimelate D-dehydrogenase

3D Structure

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Related Domains

Browse other domains in DAPDH_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFwdE/GAPDH domain-like(298)

HH-groupGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain(298.1)

TT-groupGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain(298.1.1)

FFamilyDAPDH_C(298.1.1.16)

Ligands

in contact, ≤ 4 Å

NADPHNDP
drugDrugBank DB02338
6-azanyl-2-oxidanylidene-hexanoic acid7C3

+ 2 additives (Acetate, Sulfate ion)

Acetate

Pfam Families

PF16654DAPDH_C

Diaminopimelic acid dehydrogenase C-terminal domain

ClanCL0139GADPH_aa-bio_dh

External Links

ECOD PDB View: 5GZ6 RCSB PDB: 5GZ6 PDBe: 5GZ6 UniProt: G1UII1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.