ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5h6qA3 - ECOD Domain | ECOD

ECOD/Domains/e5h6qA3

e5h6qA3

UID: 002060671

PDB

Range: A:274-639,A:747-832
PDB: 5H6Q chain A(all domains)
UniProt: O60341 (all domains)
Gene: KDM1A

Molecule: Lysine-specific histone demethylase 1A

3D Structure

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Related Domains

Browse other domains in Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain(2003.1.2.18)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF01593Amino_oxidase

Flavin containing amine oxidoreductase

ClanCL0063NADP_Rossmann

PF13450NAD_binding_8

NAD(P)-binding Rossmann-like domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5H6Q RCSB PDB: 5H6Q PDBe: 5H6Q UniProt: O60341

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.