ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v5dB1 - ECOD Domain | ECOD

ECOD/Domains/e5v5dB1

e5v5dB1

UID: 002061437

PDB

Range: B:4-196
PDB: 5V5D chain B(all domains)
UniProt: O40922 (all domains)
Gene: ORF17

Molecule: ORF 17

3D Structure

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Related Domains

Browse other domains in Peptidase_S21 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupHerpes virus serine proteinase, assemblin(50)

HH-groupHerpes virus serine proteinase, assemblin(50.1)

TT-groupHerpes virus serine proteinase, assemblin(50.1.1)

FFamilyPeptidase_S21(50.1.1.1)

Ligands

in contact, ≤ 4 Å

4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid8OY

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00716Peptidase_S21

Assemblin (Peptidase family S21)

ClanCL0201Peptidase_SH

External Links

ECOD PDB View: 5V5D RCSB PDB: 5V5D PDBe: 5V5D UniProt: O40922

Downloads

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