ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vevB2 - ECOD Domain | ECOD

ECOD/Domains/e5vevB2

e5vevB2

UID: 002061492

PDB

Range: B:326-421
PDB: 5VEV chain B(all domains)
UniProt: B4RPN9 (all domains)
Gene: purD

Molecule: Phosphoribosylamine--glycine ligase

3D Structure

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Related Domains

Browse other domains in GARS_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupCO dehydrogenase molybdoprotein N-domain-like(325.1.1)

FFamilyGARS_C(325.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, Sulfate ion, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

Phosphoribosylglycinamide synthetase, C domain

ClanCL0105Hybrid

External Links

ECOD PDB View: 5VEV RCSB PDB: 5VEV PDBe: 5VEV UniProt: B4RPN9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.