ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vevB3 - ECOD Domain | ECOD

ECOD/Domains/e5vevB3

e5vevB3

UID: 002061493

PDB

Range: B:102-325
PDB: 5VEV chain B(all domains)
UniProt: B4RPN9 (all domains)
Gene: purD

Molecule: Phosphoribosylamine--glycine ligase

3D Structure

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Related Domains

Browse other domains in GARS_A →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyGARS_A(206.1.3.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (1,2-ETHANEDIOL, Sulfate ion)

1,2-ETHANEDIOLEDO
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 5VEV RCSB PDB: 5VEV PDBe: 5VEV UniProt: B4RPN9

Downloads

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