ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c4wD1 - ECOD Domain | ECOD

ECOD/Domains/e5c4wD1

e5c4wD1

UID: 002062627

PDB

Range: D:12-69
PDB: 5C4W chain D(all domains)
UniProt: I3W9E1 (all domains)

Molecule: VP4

3D Structure

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Related Domains

Browse other domains in Pico_P1A →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPico_P1A(10.2.1.23)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02226Pico_P1A

Picornavirus coat protein (VP4)

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5C4W RCSB PDB: 5C4W PDBe: 5C4W UniProt: I3W9E1

Downloads

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