ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c9aB2 - ECOD Domain | ECOD

ECOD/Domains/e5c9aB2

e5c9aB2

UID: 002062629

PDB

Range: B:11-68
PDB: 5C9A chain B(all domains)
UniProt: I3W9E1 (all domains)

Molecule: VP0

3D Structure

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Related Domains

Browse other domains in Pico_P1A →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPico_P1A(10.2.1.23)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02226Pico_P1A

Picornavirus coat protein (VP4)

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5C9A RCSB PDB: 5C9A PDBe: 5C9A UniProt: I3W9E1

Downloads

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