ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5gjeB2 - ECOD Domain | ECOD

ECOD/Domains/e5gjeB2

e5gjeB2

UID: 002063302

PDB

Range: B:932-1197
PDB: 5GJE chain B(all domains)
UniProt: O75581 (all domains)
Gene: LRP6

Molecule: Low-density lipoprotein receptor-related protein 6

3D Structure

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Related Domains

Browse other domains in Ldl_recept_b, DUF5050 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group6-bladed(5.1.3)

FFamilyLdl_recept_b, DUF5050(5.1.3.145)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00058Ldl_recept_b

Low-density lipoprotein receptor repeat class B

ClanCL0186Beta_propeller

PF16472LRP1-like_beta_prop

LRP1, beta-propeller domain

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 5GJE RCSB PDB: 5GJE PDBe: 5GJE UniProt: O75581

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.