ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mduA2 - ECOD Domain | ECOD

ECOD/Domains/e5mduA2

e5mduA2

UID: 002066813

RepresentativePDB

Range: A:387-405,A:477-539
PDB: 5MDU chain A(all domains)
UniProt: Q9UTE3 (all domains)
Gene: seb1

Molecule: Rpb7-binding protein seb1

3D Structure

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Related Domains

Browse other domains in Nrd1-Seb1_dom2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupSeb1 domain 2(1157)

HH-groupSeb1 domain 2(1157.1)

TT-groupSeb1 domain 2(1157.1.1)

FFamilyNrd1-Seb1_dom2(1157.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21380Nrd1-Seb1_dom2

Nrd1/Seb1, domain 2

External Links

ECOD PDB View: 5MDU RCSB PDB: 5MDU PDBe: 5MDU UniProt: Q9UTE3

Downloads

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