ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mfrA1 - ECOD Domain | ECOD

ECOD/Domains/e5mfrA1

e5mfrA1

UID: 002067111

PDB

Range: A:551-870
PDB: 5MFR chain A(all domains)
UniProt: P04825 (all domains)
Gene: pepN

Molecule: Aminopeptidase N

3D Structure

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Related Domains

Browse other domains in DUF3458_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyDUF3458_C(109.4.1.241)

Ligands

in contact, ≤ 4 Å

[(7~{S})-6,6-bis(oxidanyl)-5,7,8,9-tetrahydrobenzo[7]annulen-7-yl]azanium7MK
Chloride ionCL
Sodium ionNA
metal

+ 2 additives (Glycerin, Malonate ion)

Glycerin

Pfam Families

PF17432DUF3458_C

Domain of unknown function (DUF3458_C) ARM repeats

ClanCL0020TPR

External Links

ECOD PDB View: 5MFR RCSB PDB: 5MFR PDBe: 5MFR UniProt: P04825

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Malonate ionMLI

Shown in the structure viewer. Drug annotations from DrugDomain.