ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mfrA3 - ECOD Domain | ECOD

ECOD/Domains/e5mfrA3

e5mfrA3

UID: 002067113

PDB

Range: A:444-550
PDB: 5MFR chain A(all domains)
UniProt: P04825 (all domains)
Gene: pepN

Molecule: Aminopeptidase N

3D Structure

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Related Domains

Browse other domains in DUF3458 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyDUF3458(11.1.1.155)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Dimethyl sulfoxide, Glycerin)

Dimethyl sulfoxideDMS
DrugBank DB01093
GlycerinGOL

Pfam Families

PF11940DUF3458

Domain of unknown function (DUF3458) Ig-like fold

ClanCL0159E-set

External Links

ECOD PDB View: 5MFR RCSB PDB: 5MFR PDBe: 5MFR UniProt: P04825

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.