ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nffF1 - ECOD Domain | ECOD

ECOD/Domains/e5nffF1

e5nffF1

UID: 002067187

PDB

Range: F:80-235
PDB: 5NFF chain F(all domains)
UniProt: C6ZK00 (all domains)
Gene: GPC

Molecule: Glycoprotein

3D Structure

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Related Domains

Browse other domains in Arena_glycoprot →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupEnvelope glycoprotein GP1(3081)

HH-groupEnvelope glycoprotein GP1(3081.1)

TT-groupEnvelope glycoprotein GP1(3081.1.1)

FFamilyArena_glycoprot(3081.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Pfam Families

PF00798Arena_glycoprot

Arenavirus glycoprotein

External Links

ECOD PDB View: 5NFF RCSB PDB: 5NFF PDBe: 5NFF UniProt: C6ZK00

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.