ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v6dN1 - ECOD Domain | ECOD

ECOD/Domains/e5v6dN1

e5v6dN1

UID: 002067530

PDB

Range: N:1-141
PDB: 5V6D chain N(all domains)
UniProt: B4RMG0 (all domains)
Gene: ndk

Molecule: Nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, 1,2-ETHANEDIOL)

Citric acidCIT
DrugBank DB04272
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 5V6D RCSB PDB: 5V6D PDBe: 5V6D UniProt: B4RMG0

Downloads

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