ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v87A1 - ECOD Domain | ECOD

ECOD/Domains/e5v87A1

e5v87A1

UID: 002067534

PDB

Range: A:796-941
PDB: 5V87 chain A(all domains)
UniProt: Q6PKG0 (all domains)
Gene: LARP1

Molecule: La-related protein 1

3D Structure

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Related Domains

Browse other domains in LARP1_HEAT →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyLARP1_HEAT(109.4.1.268)

Ligands

in contact, ≤ 4 Å

7-Methyl-7,8-dihydroguanosine 5'-(tetrahydrogen triphosphate)MGT
drugDrugBank DB03358
[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate91P

Pfam Families

PF21071LARP1_HEAT

LARP1 HEAT repeat region

ClanCL0020TPR

External Links

ECOD PDB View: 5V87 RCSB PDB: 5V87 PDBe: 5V87 UniProt: Q6PKG0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.