ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vbbA1 - ECOD Domain | ECOD

ECOD/Domains/e5vbbA1

e5vbbA1

UID: 002067545

PDB

Range: A:1-261
PDB: 5VBB chain A(all domains)
UniProt: Q9UJJ7 (all domains)
Gene: RPUSD1

Molecule: RNA pseudouridylate synthase domain-containing protein 1

3D Structure

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Related Domains

Browse other domains in PseudoU_synth_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_2(304.102.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Pfam Families

PF00849PseudoU_synth_2

RNA pseudouridylate synthase

ClanCL0649PseudoU_synth

External Links

ECOD PDB View: 5VBB RCSB PDB: 5VBB PDBe: 5VBB UniProt: Q9UJJ7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.